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Iran Conflict 2026
7JUN

Khamenei orders the uranium to stay

4 min read
10:12UTC

Mojtaba Khamenei reversed Iran's pre-war offer to export half its 60%-enriched stockpile on 21 May, ordering the material to remain inside the country and breaking Trump's private assurance to Netanyahu that any settlement would ship the HEU out.

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Key takeaway

Khamenei's directive converts the 60%-enriched stockpile from negotiable deal asset into permanent sovereignty claim.

Supreme Leader Mojtaba Khamenei, appointed by the Assembly of Experts on 7 March after Israeli strikes killed his father, ordered on Thursday 21 May that Iran's 60%-enriched uranium stockpile must remain inside the country, two senior Iranian sources told Reuters 1. The rationale offered through those sources: exporting the material would leave Iran more vulnerable to future US and Israeli strikes. Before the war, during quiet talks with the Trump administration, Tehran had signalled willingness to ship half of the stockpile out as a confidence-building step . Thursday's directive reverses that offer, and breaks what Israeli officials told Reuters was Donald Trump's private assurance to Benjamin Netanyahu that any settlement would require all of Iran's highly enriched uranium (HEU, uranium enriched above 20% U-235; 60% sits roughly two-thirds of the way to weapons-grade) to leave the country.

The International Atomic Energy Agency (IAEA) estimated 440.9 kg of 60%-enriched material at the time of the June 2025 strikes. The Bulletin of Atomic Scientists put the figure nearer 540 kg at the Isfahan tunnel complex, built from pre-war production rates the IAEA can no longer verify. Former Israeli intelligence officials told Haaretz last weekend that the strike campaign left Iran's nuclear capacity structurally intact . The stockpile survived; the directive now declares it will not move.

An Iranian official denied the order to Al Jazeera's Ali Hashem, calling the Reuters story "propaganda by enemies of the agreement" while conceding that Iran would "independently reduce enrichment levels within the framework" 2. The denial and the directive describe the same operational outcome: the material stays inside Iran. Iranian sources have floated dilution under IAEA supervision as a compromise, but the Majlis voted 221-0 on 11 April to suspend all IAEA cooperation. Any supervised dilution would first require Tehran to reinstate the access its own parliament has just revoked.

The doctrinal lineage matters here. Ali Khamenei's 2003 fatwa against nuclear weapons has been the IRGC's standard public proof for two decades that Iran does not seek the bomb. The 2026 inversion turns the same instrument: vulnerability to repeat strikes, not renunciation of weaponisation, becomes the reason the material stays. The trajectory resembles North Korea's 2009 reactor restart after the Six-Party Talks collapse, when material that had been a negotiating chip became permanent regime property and no subsequent process recovered it.

Deep Analysis

In plain English

Iran has been holding a large stockpile of uranium that has been partially purified; not to bomb-grade, but closer to it than normal reactor fuel. Before the 2025 war began, Iran had quietly suggested it might be willing to send some of that material out of the country as a goodwill gesture. That offer was the centrepiece of any possible deal with the US. On 21 May, Iran's new Supreme Leader, Mojtaba Khamenei, ordered that the uranium stays inside Iran. No exports, no transfers. He cited the US-Israeli strikes as proof that having the material abroad would leave Iran defenceless against future attacks. For a deal to happen, the US and Israel had both privately insisted the uranium had to leave Iranian soil. Khamenei has now ruled that out. An Iranian official tried to soften the announcement by saying Iran would reduce enrichment on its own terms, but the bottom line is the same: the material that was the main bargaining chip in any settlement is now off the table.

Deep Analysis
Root Causes

Mojtaba Khamenei's legitimacy deficit sits behind the directive's timing and force. He lacks the *marja* theological credentials Article 109 of the Iranian constitution requires for the Supreme Leader position. His power base is the IRGC, not the clerical establishment; at least eight Assembly of Experts members boycotted the 7 March appointment citing IRGC pressure.

A Supreme Leader whose institutional authority rests on IRGC backing rather than clerical consensus cannot afford to be seen agreeing to export the one material asset the IRGC treats as its deterrence architecture. The directive is therefore partly a consolidation instrument: Khamenei aligns himself with the IRGC's strategic position to shore up the domestic legitimacy the *marja* deficit denies him.

The June 2025 strike campaign removed the IAEA's verification presence while failing to destroy the stockpile. That combination; no inspectors, surviving material; produces the specific structural condition that makes retention attractive: Iran can assert it holds 540 kg (Bulletin of Atomic Scientists estimate) while the US must price the risk without being able to verify.

The directive capitalises on that asymmetry. Operation Midnight Hammer collapsed the Isfahan tunnel entrances in June 2025 but left the stockpile intact underground; the Bulletin of Atomic Scientists estimated 540 kg survived at that site, and Khamenei's 21 May directive claims that surviving material as untouchable sovereign property.

What could happen next?
  • Consequence

    US-Iran diplomacy loses its central tradeable item. Any settlement framework that required Iranian HEU export; which the Trump administration had privately committed to Netanyahu; must now be rebuilt around domestic dilution or IAEA-supervised downblending, both of which require Iranian access reinstatement the Majlis's 221-0 vote has blocked.

    Short term · Assessed
  • Risk

    Netanyahu's domestic coalition faces a credibility test. Trump's private assurance that HEU would leave Iran was a condition Netanyahu sold to Likud's right flank. If the directive holds, Netanyahu must either publicly accept a weakened settlement or push for resumed strikes; a decision that lands inside a coalition that gave him the mandate on the export condition.

    Short term · Assessed
  • Precedent

    The Khomeini fatwa parallel suggests the directive will be treated as irreversible by subsequent Iranian administrations. If the precedent holds, the HEU export route closes permanently regardless of which government sits in Tehran.

    Long term · Suggested
First Reported In

Update #105 · Khamenei keeps the uranium; House pulls the vote

Reuters· 22 May 2026
Read original
Causes and effects
This Event
Khamenei orders the uranium to stay
The Supreme Leader has converted the most negotiable item in any Iran settlement into a permanent sovereignty claim, removing the physical asset Washington and Tel Aviv had been negotiating to extract.
Different Perspectives
IAEA (Board of Governors, Vienna)
IAEA (Board of Governors, Vienna)
Grossi's 4 June Board report invoked 'loss of continuity of knowledge' on Iran's 440.9 kg stockpile after 97 days without access, the IAEA's formal finding that the evidentiary break cannot be retroactively closed. A Board censure resolution before 12 June would harden Iran's refusal to restore access.
Russia (Kremlin / SPIEF)
Russia (Kremlin / SPIEF)
Putin reaffirmed Russia's offer to hold Iran's uranium at the St Petersburg Economic Forum on 6 June, positioning Moscow as the preferred custodian even after Trump vetoed the arrangement on 27 May. The offer allows Russia to present itself as a constructive actor while the IAEA verification gap renders any custodian arrangement unworkable.
Bahrain (Government and US Fifth Fleet host)
Bahrain (Government and US Fifth Fleet host)
Bahrain's PAC-3 magazine reached 87% depletion after the 5 June IRGC salvo, with its resupply last in a Camden queue behind Qatar and Saudi Arabia. Manama hosts the US Fifth Fleet with terminal air defences that the supply chain cannot replenish before 2027.
China (Ministry of Commerce)
China (Ministry of Commerce)
Washington designated Shanghai Qianye Energy on 5 June, the first mainland Chinese firm under Iran energy sanctions this war, the same week Beijing was pitched as a uranium custodian. China has not yet invoked its Blocking Statute; whether it absorbs the designation as a calibrated cost or retaliates is unresolved.
Iran (IRGC and Expediency Council)
Iran (IRGC and Expediency Council)
The IRGC fired seven ballistic missiles at US bases in Kuwait and Bahrain on 5 June and Rezaei doubled the asset precondition to $24bn on 6 June, blocking both military and diplomatic de-escalation simultaneously. Tehran's hardliners are setting terms the civilian Foreign Ministry cannot override.
Trump administration (White House)
Trump administration (White House)
Trump claimed the uranium was 'entombed' and the deal '95% done' on 4 June, while signing no Iran executive instrument across Days 99-100. The gap between presidential assertion and signed executive action is now 100 days wide and structurally unchanged.