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Iran Conflict 2026
6JUN

Khamenei orders the uranium to stay

4 min read
12:17UTC

Mojtaba Khamenei reversed Iran's pre-war offer to export half its 60%-enriched stockpile on 21 May, ordering the material to remain inside the country and breaking Trump's private assurance to Netanyahu that any settlement would ship the HEU out.

ConflictDeveloping
Key takeaway

Khamenei's directive converts the 60%-enriched stockpile from negotiable deal asset into permanent sovereignty claim.

Supreme Leader Mojtaba Khamenei, appointed by the Assembly of Experts on 7 March after Israeli strikes killed his father, ordered on Thursday 21 May that Iran's 60%-enriched uranium stockpile must remain inside the country, two senior Iranian sources told Reuters 1. The rationale offered through those sources: exporting the material would leave Iran more vulnerable to future US and Israeli strikes. Before the war, during quiet talks with the Trump administration, Tehran had signalled willingness to ship half of the stockpile out as a confidence-building step . Thursday's directive reverses that offer, and breaks what Israeli officials told Reuters was Donald Trump's private assurance to Benjamin Netanyahu that any settlement would require all of Iran's Highly Enriched Uranium (HEU, uranium enriched above 20% U-235; 60% sits roughly two-thirds of the way to weapons-grade) to leave the country.

The International Atomic Energy Agency (IAEA) estimated 440.9 kg of 60%-enriched material at the time of the June 2025 strikes. The Bulletin of Atomic Scientists put the figure nearer 540 kg at the Isfahan tunnel complex, built from pre-war production rates the IAEA can no longer verify. Former Israeli intelligence officials told Haaretz last weekend that the strike campaign left Iran's nuclear capacity structurally intact . The stockpile survived; the directive now declares it will not move.

An Iranian official denied the order to Al Jazeera's Ali Hashem, calling the Reuters story "propaganda by enemies of the agreement" while conceding that Iran would "independently reduce enrichment levels within the framework" 2. The denial and the directive describe the same operational outcome: the material stays inside Iran. Iranian sources have floated dilution under IAEA supervision as a compromise, but the Majlis voted 221-0 on 11 April to suspend all IAEA cooperation. Any supervised dilution would first require Tehran to reinstate the access its own parliament has just revoked.

The doctrinal lineage matters here. Ali Khamenei's 2003 fatwa against nuclear weapons has been the IRGC's standard public proof for two decades that Iran does not seek the bomb. The 2026 inversion turns the same instrument: vulnerability to repeat strikes, not renunciation of weaponisation, becomes the reason the material stays. The trajectory resembles North Korea's 2009 reactor restart after the Six-Party Talks collapse, when material that had been a negotiating chip became permanent regime property and no subsequent process recovered it.

Deep Analysis

In plain English

Iran has been holding a large stockpile of uranium that has been partially purified; not to bomb-grade, but closer to it than normal reactor fuel. Before the 2025 war began, Iran had quietly suggested it might be willing to send some of that material out of the country as a goodwill gesture. That offer was the centrepiece of any possible deal with the US. On 21 May, Iran's new Supreme Leader, Mojtaba Khamenei, ordered that the uranium stays inside Iran. No exports, no transfers. He cited the US-Israeli strikes as proof that having the material abroad would leave Iran defenceless against future attacks. For a deal to happen, the US and Israel had both privately insisted the uranium had to leave Iranian soil. Khamenei has now ruled that out. An Iranian official tried to soften the announcement by saying Iran would reduce enrichment on its own terms, but the bottom line is the same: the material that was the main bargaining chip in any settlement is now off the table.

Deep Analysis
Root Causes

Mojtaba Khamenei's legitimacy deficit sits behind the directive's timing and force. He lacks the *marja* theological credentials Article 109 of the Iranian constitution requires for the Supreme Leader position. His power base is the IRGC, not the clerical establishment; at least eight Assembly of Experts members boycotted the 7 March appointment citing IRGC pressure.

A Supreme Leader whose institutional authority rests on IRGC backing rather than clerical consensus cannot afford to be seen agreeing to export the one material asset the IRGC treats as its deterrence architecture. The directive is therefore partly a consolidation instrument: Khamenei aligns himself with the IRGC's strategic position to shore up the domestic legitimacy the *marja* deficit denies him.

The June 2025 strike campaign removed the IAEA's verification presence while failing to destroy the stockpile. That combination; no inspectors, surviving material; produces the specific structural condition that makes retention attractive: Iran can assert it holds 540 kg (Bulletin of Atomic Scientists estimate) while the US must price the risk without being able to verify.

The directive capitalises on that asymmetry. Operation Midnight Hammer collapsed the Isfahan tunnel entrances in June 2025 but left the stockpile intact underground; the Bulletin of Atomic Scientists estimated 540 kg survived at that site, and Khamenei's 21 May directive claims that surviving material as untouchable sovereign property.

What could happen next?
  • Consequence

    US-Iran diplomacy loses its central tradeable item. Any settlement framework that required Iranian HEU export; which the Trump administration had privately committed to Netanyahu; must now be rebuilt around domestic dilution or IAEA-supervised downblending, both of which require Iranian access reinstatement the Majlis's 221-0 vote has blocked.

    Short term · Assessed
  • Risk

    Netanyahu's domestic coalition faces a credibility test. Trump's private assurance that HEU would leave Iran was a condition Netanyahu sold to Likud's right flank. If the directive holds, Netanyahu must either publicly accept a weakened settlement or push for resumed strikes; a decision that lands inside a coalition that gave him the mandate on the export condition.

    Short term · Assessed
  • Precedent

    The Khomeini fatwa parallel suggests the directive will be treated as irreversible by subsequent Iranian administrations. If the precedent holds, the HEU export route closes permanently regardless of which government sits in Tehran.

    Long term · Suggested
First Reported In

Update #105 · Khamenei keeps the uranium; House pulls the vote

Reuters· 22 May 2026
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Causes and effects
This Event
Khamenei orders the uranium to stay
The Supreme Leader has converted the most negotiable item in any Iran settlement into a permanent sovereignty claim, removing the physical asset Washington and Tel Aviv had been negotiating to extract.
Different Perspectives
Israel
Israel
The IDF struck a Lebanese army unit on 6 June, killing a colonel, and privately told Moscow that shelling near Bushehr was accidental, per Putin's SPIEF disclosure. Israel is advancing in Lebanon past an unenforced ceasefire text while maintaining a back-channel to Russia on nuclear-site deconfliction.
Lebanon
Lebanon
President Aoun told CNN on 5 June that Iran uses Lebanon as a bargaining chip and urged Hezbollah toward diplomacy; on 6 June an IDF strike killed a Lebanese army colonel on the Khardali-Nabatieh road. The Lebanese state is publicly rejecting Iranian tutelage while the army sustains casualties from Israeli fire and the Washington framework remains unenforced.
Bahrain
Bahrain
Bahrain's US Fifth Fleet headquarters was among the targets in the 5-6 June two-country salvo; its PAC-3 magazine stands at 87 per cent depletion with an 18-month resupply gap and no comparable arms sale has been announced. The state is defending a critical US regional command on a thinning interceptor stock.
Kuwait
Kuwait
Kuwait received a $1.98bn US counter-drone sale approval on the same day IRGC missiles targeted its bases; it expelled two Iranian diplomats on 4 June and filed a formal protest. The arms approval gives Kuwait a future capability but leaves a 6-18 month delivery gap that the salvo tempo is already pressing.
Russia
Russia
Putin reaffirmed Russia's offer to hold Iran's 440.9 kg HEU at SPIEF on 6 June, said Russia is not arming Iran, and disclosed that both the US and Israel privately told Moscow that shelling near Bushehr was accidental. The restatement casts Moscow as the only remaining mediator both sides call, a position serving Russian interests whatever the nuclear file produces.
Iran
Iran
The IRGC, per Iranian state media, fired seven ballistic missiles at US bases in Kuwait and Bahrain, the largest two-country salvo of the war, and framed the launches as lawful retaliation; Foreign Minister Araghchi rejected Aoun's bargaining-chip accusation and Velayati warned Beirut against diplomatic naivety. Tehran has sent no HEU counter-proposal since Araghchi confirmed no progress on 4 June.