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Iran Conflict 2026
10JUN

CIA and Mossad hunt for Khamenei

4 min read
09:46UTC

Thirteen days after being named supreme leader, Mojtaba Khamenei has not appeared in public. Western intelligence agencies cannot confirm he is alive and capable of command.

ConflictDeveloping
Key takeaway

Western intelligence has no proof of life for Iran's wartime supreme leader after 13 days.

Mojtaba Khamenei has not been seen in public since the Assembly of Experts named him Supreme Leader on 9 March — thirteen days without a video appearance, a voice recording, or a verified photograph. His sole substantive act has been a written Nowruz message, read by a presenter on state television, claiming the "enemy has been defeated" and urging media to "refrain from focusing on weaknesses" . Every Supreme Leader since the Islamic Republic's founding in 1979 has delivered a televised Nowruz address in person . Mojtaba did not.

The CIA, Mossad, and allied intelligence agencies are actively searching for evidence that Khamenei is alive and functioning, Axios reported, citing US and allied officials 1. One US official stated: "We don't think the Iranians would have gone through all this trouble to choose a dead guy as The Supreme Leader, but at the same time, we have no proof that he is taking the helm" 2. A leaked audio recording obtained by The Telegraph — from Mazaher Hosseini, head of protocol for Ali Khamenei's office, speaking at a 12 March meeting — described Mojtaba stepping into his garden moments before ballistic missiles struck his home on 28 February. His wife and son were killed instantly. He survived with a leg injury, by "mere seconds" . Defence Secretary Hegseth subsequently claimed Khamenei is "wounded and likely disfigured." Trump told reporters on 10 March: "We don't know if he's dead or not... A lot of people are saying that he's badly disfigured" . The IDF has publicly named him as an assassination target — Brig. Gen. Effie Defrin stated on camera: "He is not immune. We will pursue him, find him, and neutralise him" .

Iran's constitution vests The Supreme Leader with sole command of all armed forces and sole authority to declare war or accept its end. The Khatam al-Anbiya Central Headquarters — which issued the counter-threat to Trump's 48-hour power-grid ultimatum — reports directly to him. The Diego Garcia missile strike, which revealed a 4,000 km range Iran had publicly denied possessing, required authorisation from the supreme command level. If Khamenei cannot function, Article 111 of the constitution provides for a temporary three-member Leadership Council — the president, the head of the judiciary, and a Guardian Council jurist. This mechanism has never been activated, and its members lack both the IRGC's institutional loyalty and the theological authority The Supreme Leader holds as velayat-e faqih, the guardianship of the Islamic jurist that is the constitutional foundation of the office's power. Any diplomatic off-ramp also requires a counterpart with authority to agree terms — and it is unclear who that counterpart is. Iran is fighting a war in which the individual constitutionally responsible for both prosecuting and ending hostilities has not been verified as functional by any Western or allied intelligence service in thirteen days.

Deep Analysis

In plain English

In Iran's political system, the supreme leader holds authority above the president, parliament, and military. Generals require political authorisation before making decisions that could escalate to full-scale war. Mojtaba Khamenei was named to this role on 9 March — but has not appeared in public, spoken on camera, or issued any verified voice communication since. The CIA and Mossad are actively searching for proof he is alive and functional. This matters operationally: if no one with recognised authority can accept a ceasefire offer or authorise a military stand-down, the machinery for ending this conflict is missing a critical component at precisely the moment Trump's 48-hour ultimatum requires a functional Iranian counterpart.

Deep Analysis
Synthesis

The absence intersects with Trump's 48-hour ultimatum in a specific operational way. Ultimatums require a responsive counterpart with authority to comply. The US may be delivering demands to an entity that cannot functionally respond. Enforcement then becomes the default outcome: if no one can authorise compliance, the deadline passes regardless of intent — making strike execution structurally more likely independent of US resolve.

Root Causes

Iran's velayat-e faqih system concentrates decision-making in a single individual and provides no constitutional mechanism for managing a temporarily incapacitated leader. The rapid wartime succession — conducted under bombardment, without the usual public legitimation process — created a structural gap between formal title and operational authority. The Assembly of Experts, which theoretically oversees the supreme leader, has no precedent for intervening in a wartime leadership question and no institutional history of asserting such authority.

Escalation

A functioning supreme leader is the only figure in Iran's system who can overrule the IRGC's escalatory preferences. Without visible authorisation, the Khatam al-Anbiya HQ — which issued the civilian infrastructure counter-threat (Event 1) — may be acting with autonomous authority it does not formally possess. Military commanders making escalatory decisions without political oversight is the precise pathway to accidental or unintended escalation that conflict-termination theory identifies as most dangerous.

What could happen next?
  • Risk

    IRGC commanders may be making escalatory military decisions without supreme leader authorisation, including the Diego Garcia strike and the civilian infrastructure counter-threat.

    Immediate · Suggested
  • Consequence

    The 48-hour ultimatum mechanism is structurally compromised if no Iranian authority can formally receive, evaluate, and respond to it.

    Immediate · Assessed
  • Risk

    Competing Iranian power centres — IRGC, Foreign Ministry, Assembly of Experts — may issue contradictory signals, making Iranian intentions unreadable to external actors.

    Short term · Suggested
  • Meaning

    The CIA and Mossad's active search for proof of life represents an intelligence priority shift from targeting to verification — confirming leadership uncertainty has become the dominant operational question.

    Short term · Reported
First Reported In

Update #44 · Trump: 48 hours to destroy Iran power grid

Axios· 22 Mar 2026
Read original
Causes and effects
This Event
CIA and Mossad hunt for Khamenei
Iran's supreme leader is the constitutional commander-in-chief and sole authority on war-and-peace decisions. His unverified status during active hostilities raises direct questions about who is authorising Iranian military operations — including the Diego Garcia missile strike and the counter-threat to Trump's power-grid ultimatum — and who possesses the authority to negotiate an end to the war.
Different Perspectives
Oil markets / Lloyd's underwriters
Oil markets / Lloyd's underwriters
Futures markets priced CENTCOM's strikes-complete statement as a de-escalation signal and pushed Brent down 1.7 per cent to $94.71, even as the IRGC declared Hormuz closed. Lloyd's war-risk premiums held elevated because institutional de-listing requires a UN Security Council resolution that Russia and China have just shown they will block.
Pakistan (mediator)
Pakistan (mediator)
Interior minister Mohsin Naqvi carried dual civilian and military letters to Mojtaba Khamenei in Tehran on 6-7 June with no public response. The IRGC's Hormuz closure on 11 June shows the corps is acting independently of the channel Pakistan is using, making the mediation structurally unable to produce a binding commitment without direct IRGC access.
Russia and China
Russia and China
Russia and China voted against GOV/2026/40 at the IAEA Board, following through on the blocking position coordinated with Grossi in Geneva on 5 June; both states continue to oppose Western institutional pressure on Iran at every multilateral venue.
E3 and IAEA (UK, France, Germany)
E3 and IAEA (UK, France, Germany)
The E3 co-sponsored IAEA resolution GOV/2026/40, adopted 21-3-10 on 10 June, demanding Iran disclose 440.9 kg of unaccounted HEU and admit inspectors to four denied facilities. The 10 abstentions and Russia-China noes leave any Security Council referral without a viable enforcement path.
IRGC / Iran military command
IRGC / Iran military command
The corps declared Hormuz closed to all traffic on 11 June and claimed two vessels struck, overriding the MoU its own civilian negotiators were pursuing through Pakistan. The closure order used the Persian Gulf Strait Authority apparatus to convert a toll mechanism into a military prohibition.
Trump administration / CENTCOM
Trump administration / CENTCOM
CENTCOM completed a second day of strikes on Tehran, Sirik and Minab, rejected the IRGC Hormuz closure as inconsistent with observed transit, and said strikes were complete. Hegseth framed the bombing explicitly as the negotiation: the method is coercive deal-making with no stated pause threshold.